ChemFOnt: Showing chemical card for Cer(d18:0/PGD2) (CFc000269470)

Record Information

Version

1.0

Creation Date

2022-08-28 10:25:12 UTC

Update Date

2022-09-14 03:09:54 UTC

Chemfont ID

CFc000269470

Molecule Identification

Common Name

Cer(d18:0/PGD2)

Definition

2698

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
(5Z)-N-[(2S,3R)-1,3-Dihydroxyoctadecan-2-yl]-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enimidate	Generator

Chemical Formula

C₃₈H₆₉NO₆

Average Molecular Weight

635.971

Monoisotopic Molecular Weight

635.512488946

IUPAC Name

(5Z)-N-[(2S,3R)-1,3-dihydroxyoctadecan-2-yl]-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enamide

Traditional Name

(5Z)-N-[(2S,3R)-1,3-dihydroxyoctadecan-2-yl]-7-[(1R,2R,5S)-5-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-3-oxocyclopentyl]hept-5-enamide

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCCC[C@@H](O)[C@H](CO)NC(=O)CCC\C=C/C[C@H]1[C@@H](O)CC(=O)[C@@H]1\C=C\[C@@H](O)CCCCC

InChI Identifier

InChI=1S/C38H69NO6/c1-3-5-7-8-9-10-11-12-13-14-15-16-21-25-35(42)34(30-40)39-38(45)26-22-18-17-20-24-32-33(37(44)29-36(32)43)28-27-31(41)23-19-6-4-2/h17,20,27-28,31-36,40-43H,3-16,18-19,21-26,29-30H2,1-2H3,(H,39,45)/b20-17-,28-27+/t31-,32+,33+,34-,35+,36-/m0/s1

InChI Key

LOOXMWWZBQHPSP-BXQAAPEISA-N

Chemical Taxonomy

Classification

Not classified

Functional Ontology

Physiological effect

Health effect

Metabolic disorder

Metabolic syndrome (PMID: 24214972)

Endocrine system disorder

Diabetes mellitus (PMID: 17588815)

Nervous system disorder

Central nervous system disorder

Neurodegenerative disease (PMID: 17588815)

Disposition

Biological location

Cell

All cells and tissues (HMDB: HMDB0289954)

Cellular substructure

Organelle

Endoplasmic reticulum (PMID: 12408751)

Golgi apparatus membrane (PMID: 12408751)
Cell membrane (PMID: 12408751)

Source

Endogenous

Endogenous (HMDB: HMDB0289954)

Process

Naturally occurring process

Biological process

Cellular process

Role

Not Available

Physical Properties

Predicted Properties

Property	Value	Source
Water Solubility	0.00059 g/L	ALOGPS
logP	6.96	ALOGPS
logP	8.04	ChemAxon
logS	-6	ALOGPS
pKa (Strongest Acidic)	13.46	ChemAxon
pKa (Strongest Basic)	-0.94	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	127.09 Å²	ChemAxon
Rotatable Bond Count	29	ChemAxon
Refractivity	187.16 m³·mol⁻¹	ChemAxon
Polarizability	80.42 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0289954

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

Showing chemical card for Cer(d18:0/PGD2) (CFc000269470)

MOL for CFc000269470 (Cer(d18:0/PGD2))

3D MOL for CFc000269470 (Cer(d18:0/PGD2))

3D SDF for CFc000269470 (Cer(d18:0/PGD2))

3D-SDF for CFc000269470 (Cer(d18:0/PGD2))

PDB for CFc000269470 (Cer(d18:0/PGD2))

3D PDB for CFc000269470 (Cer(d18:0/PGD2))

SMILES for CFc000269470 (Cer(d18:0/PGD2))

INCHI for CFc000269470 (Cer(d18:0/PGD2))

Structure for CFc000269470 (Cer(d18:0/PGD2))

3D Structure for CFc000269470 (Cer(d18:0/PGD2))