ChemFOnt: Showing chemical card for [4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid (CFc000167875)

Record Information

Version

1.0

Creation Date

2022-08-28 10:25:12 UTC

Update Date

2022-09-14 00:02:09 UTC

Chemfont ID

CFc000167875

Molecule Identification

Common Name

Definition

[4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid belongs to the class of organic compounds known as pyrimidine ribonucleoside diphosphates. These are pyrimidine ribonucleotides with diphosphate group linked to the ribose moiety. Based on a literature review very few articles have been published on [4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
[4-Hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonate	Generator
[4-Hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulphonate	Generator
[4-Hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulphonic acid	Generator

Chemical Formula

C₁₅H₂₅N₃O₁₉P₂S

Average Molecular Weight

645.37

Monoisotopic Molecular Weight

645.027820767

IUPAC Name

Traditional Name

[4-hydroxy-2-({[hydroxy([hydroxy([3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy)phosphoryl]oxy)phosphoryl]oxy}methyl)-5-(2-hydroxy-4-iminopyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid

CAS Registry Number

Not Available

SMILES

OCC1OC(OP(O)(=O)OP(O)(=O)OCC2OC(C(O)C2OS(O)(=O)=O)N2C=CC(=N)N=C2O)C(O)C(O)C1O

InChI Identifier

InChI=1S/C15H25N3O19P2S/c16-7-1-2-18(15(24)17-7)13-11(23)12(36-40(29,30)31)6(33-13)4-32-38(25,26)37-39(27,28)35-14-10(22)9(21)8(20)5(3-19)34-14/h1-2,5-6,8-14,19-23H,3-4H2,(H,25,26)(H,27,28)(H2,16,17,24)(H,29,30,31)

InChI Key

FXYJZTJBCDRCNX-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrimidine ribonucleoside diphosphates. These are pyrimidine ribonucleotides with diphosphate group linked to the ribose moiety.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Pyrimidine nucleotides

Sub Class

Pyrimidine ribonucleotides

Direct Parent

Pyrimidine ribonucleoside diphosphates

Alternative Parents

Substituents

Pyrimidine ribonucleoside diphosphate
Pentose phosphate
Pentose-5-phosphate
Glycosyl compound
N-glycosyl compound
Monosaccharide phosphate
Organic pyrophosphate
Hydroxypyrimidine
Sugar acid
Monoalkyl phosphate
Hydropyrimidine
Monosaccharide
Organic phosphoric acid derivative
Oxane
Phosphoric acid ester
Pyrimidine
Sulfuric acid monoester
Sulfate-ester
Alkyl sulfate
Sulfuric acid ester
Alkyl phosphate
Organic sulfuric acid or derivatives
Heteroaromatic compound
Tetrahydrofuran
Secondary alcohol
Organoheterocyclic compound
Polyol
Azacycle
Oxacycle
Primary alcohol
Organopnictogen compound
Organooxygen compound
Organic oxygen compound
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Alcohol
Organonitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

Predicted Properties

Property	Value	Source
Water Solubility	23 g/L	ALOGPS
logP	-1.2	ALOGPS
logP	-5.8	ChemAxon
logS	-1.4	ALOGPS
pKa (Strongest Acidic)	-2	ChemAxon
pKa (Strongest Basic)	2.22	ChemAxon
Physiological Charge	-3	ChemAxon
Hydrogen Acceptor Count	18	ChemAxon
Hydrogen Donor Count	10	ChemAxon
Polar Surface Area	345.18 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	129.84 m³·mol⁻¹	ChemAxon
Polarizability	52.62 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

HMDB0187611

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

Showing chemical card for [4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid (CFc000167875)

MOL for CFc000167875 ([4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid)

3D MOL for CFc000167875 ([4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid)

3D SDF for CFc000167875 ([4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid)

3D-SDF for CFc000167875 ([4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid)

PDB for CFc000167875 ([4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid)

3D PDB for CFc000167875 ([4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid)

SMILES for CFc000167875 ([4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid)

INCHI for CFc000167875 ([4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid)

Structure for CFc000167875 ([4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid)

3D Structure for CFc000167875 ([4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid)