ChemFOnt: Showing chemical card for (6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid (CFc000164177)

Record Information

Version

1.0

Creation Date

2022-08-28 10:25:12 UTC

Update Date

2022-09-13 23:55:38 UTC

Chemfont ID

CFc000164177

Molecule Identification

Common Name

(6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid

Definition

(6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid belongs to the class of organic compounds known as retinoids. These are oxygenated derivatives of 3,7-dimethyl-1-(2,6,6-trimethylcyclohex-1-enyl)nona-1,3,5,7-tetraene and derivatives thereof. Based on a literature review very few articles have been published on (6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
(6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoate	Generator
(6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulphanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoate	Generator
(6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulphanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid	Generator

Chemical Formula

C₃₀H₄₇N₃O₉S

Average Molecular Weight

625.78

Monoisotopic Molecular Weight

625.303301279

IUPAC Name

(4E,6Z,8E)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid

Traditional Name

(4E,6Z,8E)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-(carboxymethyl-C-hydroxycarbonimidoyl)ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid

CAS Registry Number

Not Available

SMILES

[H]C(C(C)CC(O)=O)=C([H])C(\[H])=C(\C)C([H])=C([H])C1(O)C(C)(C)CCCC1(C)SCC(N=C(O)CCC(N)C(O)=O)C(O)=NCC(O)=O

InChI Identifier

InChI=1S/C30H47N3O9S/c1-19(8-6-9-20(2)16-24(35)36)12-15-30(42)28(3,4)13-7-14-29(30,5)43-18-22(26(39)32-17-25(37)38)33-23(34)11-10-21(31)27(40)41/h6,8-9,12,15,20-22,42H,7,10-11,13-14,16-18,31H2,1-5H3,(H,32,39)(H,33,34)(H,35,36)(H,37,38)(H,40,41)/b9-6+,15-12+,19-8-

InChI Key

FQPHSYHOTOFJIT-LQXIIXMZSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as retinoids. These are oxygenated derivatives of 3,7-dimethyl-1-(2,6,6-trimethylcyclohex-1-enyl)nona-1,3,5,7-tetraene and derivatives thereof.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Retinoids

Direct Parent

Retinoids

Alternative Parents

Substituents

Retinoic acid
Diterpenoid
Alpha peptide
Retinoid skeleton
N-acyl-alpha-amino acid
N-acyl-alpha amino acid or derivatives
Alpha-amino acid
Alpha-amino acid or derivatives
Tricarboxylic acid or derivatives
Cyclohexanol
Cyclic alcohol
Tertiary alcohol
Amino acid or derivatives
Amino acid
Carboximidic acid
Carboximidic acid derivative
Carboxylic acid derivative
Carboxylic acid
Dialkylthioether
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Sulfenyl compound
Thioether
Amine
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Organic nitrogen compound
Primary aliphatic amine
Organopnictogen compound
Carbonyl group
Organonitrogen compound
Organooxygen compound
Organosulfur compound
Alcohol
Primary amine
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

Predicted Properties

Property	Value	Source
Water Solubility	0.0028 g/L	ALOGPS
logP	0.12	ALOGPS
logP	0.67	ChemAxon
logS	-5.3	ALOGPS
pKa (Strongest Acidic)	1.56	ChemAxon
pKa (Strongest Basic)	9.54	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	223.33 Å²	ChemAxon
Rotatable Bond Count	17	ChemAxon
Refractivity	165.9 m³·mol⁻¹	ChemAxon
Polarizability	66.83 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0183888

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

Showing chemical card for (6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid (CFc000164177)

MOL for CFc000164177 ((6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid)

3D MOL for CFc000164177 ((6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid)

3D SDF for CFc000164177 ((6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid)

3D-SDF for CFc000164177 ((6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid)

PDB for CFc000164177 ((6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid)

3D PDB for CFc000164177 ((6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid)

SMILES for CFc000164177 ((6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid)

INCHI for CFc000164177 ((6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid)

Structure for CFc000164177 ((6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid)

3D Structure for CFc000164177 ((6Z)-9-[2-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-1-hydroxy-2,6,6-trimethylcyclohexyl]-3,7-dimethylnona-4,6,8-trienoic acid)