ChemFOnt: Showing chemical card for 6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid (CFc000160593)

Record Information

Version

1.0

Creation Date

2022-08-28 10:25:12 UTC

Update Date

2022-09-13 23:49:16 UTC

Chemfont ID

CFc000160593

Molecule Identification

Common Name

6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid

Definition

6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid belongs to the class of organic compounds known as purine nucleosides. Purine nucleosides are compounds comprising a purine base attached to a ribosyl or deoxyribosyl moiety. Based on a literature review very few articles have been published on 6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylate	Generator

Chemical Formula

C₂₁H₂₉N₅O₁₂

Average Molecular Weight

543.486

Monoisotopic Molecular Weight

543.181271394

IUPAC Name

6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid

Traditional Name

6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

[H]\C(CNC1=C2N=CN(C3OC(CO)C(O)C3O)C2=NC=N1)=C(\CO)COC1OC(C(O)C(O)C1O)C(O)=O

InChI Identifier

InChI=1S/C21H29N5O12/c27-3-8(5-36-21-15(33)12(30)13(31)16(38-21)20(34)35)1-2-22-17-10-18(24-6-23-17)26(7-25-10)19-14(32)11(29)9(4-28)37-19/h1,6-7,9,11-16,19,21,27-33H,2-5H2,(H,34,35)(H,22,23,24)/b8-1+

InChI Key

BRZZLGMSJCPNGY-UNXLUWIOSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as purine nucleosides. Purine nucleosides are compounds comprising a purine base attached to a ribosyl or deoxyribosyl moiety.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Purine nucleosides

Sub Class

Not Available

Direct Parent

Purine nucleosides

Alternative Parents

Substituents

Purine nucleoside
Fatty acyl glycoside of mono- or disaccharide
Fatty acyl glycoside
O-glucuronide
1-o-glucuronide
Glucuronic acid or derivatives
Alkyl glycoside
6-alkylaminopurine
O-glycosyl compound
N-glycosyl compound
Glycosyl compound
6-aminopurine
Purine
Imidazopyrimidine
Secondary aliphatic/aromatic amine
Beta-hydroxy acid
Aminopyrimidine
Fatty acyl
Imidolactam
Pyrimidine
Pyran
Oxane
N-substituted imidazole
Monosaccharide
Hydroxy acid
Heteroaromatic compound
Tetrahydrofuran
Imidazole
Azole
Amino acid
Secondary alcohol
Amino acid or derivatives
Oxacycle
Azacycle
Organoheterocyclic compound
Secondary amine
Polyol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Acetal
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Organonitrogen compound
Carbonyl group
Amine
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

Predicted Properties

Property	Value	Source
Water Solubility	6.97 g/L	ALOGPS
logP	-1.9	ALOGPS
logP	-5.2	ChemAxon
logS	-1.9	ALOGPS
pKa (Strongest Acidic)	3.28	ChemAxon
pKa (Strongest Basic)	3.91	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	16	ChemAxon
Hydrogen Donor Count	9	ChemAxon
Polar Surface Area	262.23 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	123.64 m³·mol⁻¹	ChemAxon
Polarizability	52.62 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

HMDB0180185

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

Showing chemical card for 6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid (CFc000160593)

MOL for CFc000160593 (6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D MOL for CFc000160593 (6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D SDF for CFc000160593 (6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D-SDF for CFc000160593 (6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid)

PDB for CFc000160593 (6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D PDB for CFc000160593 (6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid)

SMILES for CFc000160593 (6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid)

INCHI for CFc000160593 (6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid)

Structure for CFc000160593 (6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D Structure for CFc000160593 (6-[(2E)-2-[2-({9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-9H-purin-6-yl}amino)ethylidene]-3-hydroxypropoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid)