ChemFOnt: Showing chemical card for 6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid (CFc000140893)

Record Information

Version

1.0

Creation Date

2022-08-28 10:25:12 UTC

Update Date

2022-09-13 23:17:07 UTC

Chemfont ID

CFc000140893

Molecule Identification

Common Name

6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid

Definition

6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds. Based on a literature review very few articles have been published on 6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylate	Generator

Chemical Formula

C₂₄H₄₂N₂O₁₉

Average Molecular Weight

662.595

Monoisotopic Molecular Weight

662.23817714

IUPAC Name

6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid

Traditional Name

6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

NCC(CCC(N)C(O)=O)OC1OC(CO)C(OC2OC(C(O)C(O)C2O)C(O)=O)C(O)C1OC1OC(CO)C(O)C(O)C1O

InChI Identifier

InChI=1S/C24H42N2O19/c25-3-6(1-2-7(26)20(36)37)40-24-19(45-22-14(33)11(30)10(29)8(4-27)41-22)16(35)17(9(5-28)42-24)43-23-15(34)12(31)13(32)18(44-23)21(38)39/h6-19,22-24,27-35H,1-5,25-26H2,(H,36,37)(H,38,39)

InChI Key

IDSBJNUGIAYFOB-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Oligosaccharides

Alternative Parents

Substituents

Oligosaccharide
Fatty acyl glycoside
O-glucuronide
1-o-glucuronide
Glucuronic acid or derivatives
O-glycosyl compound
Glycosyl compound
Alpha-amino acid
Alpha-amino acid or derivatives
Medium-chain fatty acid
Amino fatty acid
Beta-hydroxy acid
Hydroxy fatty acid
Heterocyclic fatty acid
Dicarboxylic acid or derivatives
Oxane
Hydroxy acid
Fatty acyl
Pyran
Fatty acid
Amino acid or derivatives
Amino acid
Secondary alcohol
Polyol
Acetal
Carboxylic acid derivative
Organoheterocyclic compound
Oxacycle
Carboxylic acid
Organonitrogen compound
Hydrocarbon derivative
Carbonyl group
Alcohol
Organic oxide
Primary amine
Amine
Organopnictogen compound
Organic nitrogen compound
Primary alcohol
Primary aliphatic amine
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

Predicted Properties

Property	Value	Source
Water Solubility	72.7 g/L	ALOGPS
logP	-2.9	ALOGPS
logP	-11	ChemAxon
logS	-0.96	ALOGPS
pKa (Strongest Acidic)	1.72	ChemAxon
pKa (Strongest Basic)	9.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	21	ChemAxon
Hydrogen Donor Count	13	ChemAxon
Polar Surface Area	364.09 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	136.28 m³·mol⁻¹	ChemAxon
Polarizability	62.5 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

HMDB0160485

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

Showing chemical card for 6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid (CFc000140893)

MOL for CFc000140893 (6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D MOL for CFc000140893 (6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D SDF for CFc000140893 (6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D-SDF for CFc000140893 (6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid)

PDB for CFc000140893 (6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D PDB for CFc000140893 (6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid)

SMILES for CFc000140893 (6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid)

INCHI for CFc000140893 (6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid)

Structure for CFc000140893 (6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D Structure for CFc000140893 (6-({6-[(1,5-diamino-5-carboxypentan-2-yl)oxy]-4-hydroxy-2-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-3-yl}oxy)-3,4,5-trihydroxyoxane-2-carboxylic acid)