ChemFOnt: Showing chemical card for 6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (CFc000140517)

Record Information

Version

1.0

Creation Date

2022-08-28 10:25:12 UTC

Update Date

2022-09-13 23:16:35 UTC

Chemfont ID

CFc000140517

Molecule Identification

Common Name

6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid

Definition

6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid belongs to the class of organic compounds known as o-glucuronides. These are glucuronides in which the aglycone is linked to the carbohydrate unit through an O-glycosidic bond. Based on a literature review very few articles have been published on 6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylate	Generator

Chemical Formula

C₁₂H₁₆N₂O₁₀

Average Molecular Weight

348.264

Monoisotopic Molecular Weight

348.080494723

IUPAC Name

6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid

Traditional Name

6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

OCC1=C(COC2OC(C(O)C(O)C2O)C(O)=O)N=C(O)N=C1O

InChI Identifier

InChI=1S/C12H16N2O10/c15-1-3-4(13-12(22)14-9(3)19)2-23-11-7(18)5(16)6(17)8(24-11)10(20)21/h5-8,11,15-18H,1-2H2,(H,20,21)(H2,13,14,19,22)

InChI Key

XAHBNTTVCVEQTF-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-glucuronides. These are glucuronides in which the aglycone is linked to the carbohydrate unit through an O-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

O-glucuronides

Alternative Parents

Substituents

1-o-glucuronide
O-glucuronide
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Beta-hydroxy acid
Hydroxypyrimidine
Hydroxy acid
Monosaccharide
Oxane
Pyran
Pyrimidine
Heteroaromatic compound
Secondary alcohol
Azacycle
Organoheterocyclic compound
Carboxylic acid derivative
Carboxylic acid
Acetal
Monocarboxylic acid or derivatives
Oxacycle
Polyol
Carbonyl group
Organic oxide
Aromatic alcohol
Alcohol
Hydrocarbon derivative
Primary alcohol
Organic nitrogen compound
Organonitrogen compound
Organopnictogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

Predicted Properties

Property	Value	Source
Water Solubility	25.4 g/L	ALOGPS
logP	-1.6	ALOGPS
logP	-2.2	ChemAxon
logS	-1.1	ALOGPS
pKa (Strongest Acidic)	2.57	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	202.92 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	72.33 m³·mol⁻¹	ChemAxon
Polarizability	31.19 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0160109

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

Showing chemical card for 6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (CFc000140517)

MOL for CFc000140517 (6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D MOL for CFc000140517 (6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D SDF for CFc000140517 (6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D-SDF for CFc000140517 (6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid)

PDB for CFc000140517 (6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D PDB for CFc000140517 (6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid)

SMILES for CFc000140517 (6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid)

INCHI for CFc000140517 (6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid)

Structure for CFc000140517 (6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D Structure for CFc000140517 (6-{[2,6-dihydroxy-5-(hydroxymethyl)pyrimidin-4-yl]methoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid)