ChemFOnt: Showing chemical card for 6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid (CFc000136290)

Record Information

Version

1.0

Creation Date

2022-08-28 10:25:12 UTC

Update Date

2022-09-13 22:09:44 UTC

Chemfont ID

CFc000136290

Molecule Identification

Common Name

6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid

Definition

6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid belongs to the class of organic compounds known as pyrimidine nucleosides. Pyrimidine nucleosides are compounds comprising a pyrimidine base attached to a ribosyl or deoxyribosyl moiety. Based on a literature review very few articles have been published on 6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
6-Hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylate	Generator
6-Hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulphooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylate	Generator
6-Hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulphooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid	Generator

Chemical Formula

C₁₀H₁₂N₂O₁₁S

Average Molecular Weight

368.27

Monoisotopic Molecular Weight

368.016180388

IUPAC Name

6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid

Traditional Name

6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxopyrimidine-4-carboxylic acid

CAS Registry Number

Not Available

SMILES

OCC1OC(C(OS(O)(=O)=O)C1O)N1C(=O)N=C(O)C=C1C(O)=O

InChI Identifier

InChI=1S/C10H12N2O11S/c13-2-4-6(15)7(23-24(19,20)21)8(22-4)12-3(9(16)17)1-5(14)11-10(12)18/h1,4,6-8,13,15H,2H2,(H,16,17)(H,11,14,18)(H,19,20,21)

InChI Key

XJBFLBAOOCNETO-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrimidine nucleosides. Pyrimidine nucleosides are compounds comprising a pyrimidine base attached to a ribosyl or deoxyribosyl moiety.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Pyrimidine nucleosides

Sub Class

Not Available

Direct Parent

Pyrimidine nucleosides

Alternative Parents

Substituents

Pyrimidine nucleoside
Glycosyl compound
N-glycosyl compound
Hydropyrimidine carboxylic acid derivative
Pyrimidine-6-carboxylic acid or derivatives
Pyrimidine-6-carboxylic acid
Hydroxypyrimidine
Pyrimidone
Hydropyrimidine
Pyrimidine
Monosaccharide
Sulfuric acid monoester
Sulfuric acid ester
Alkyl sulfate
Sulfate-ester
Tetrahydrofuran
Heteroaromatic compound
Organic sulfuric acid or derivatives
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Monocarboxylic acid or derivatives
Oxacycle
Azacycle
Organoheterocyclic compound
Hydrocarbon derivative
Alcohol
Organic oxide
Organopnictogen compound
Organonitrogen compound
Organooxygen compound
Primary alcohol
Organic nitrogen compound
Organic oxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

Predicted Properties

Property	Value	Source
Water Solubility	11 g/L	ALOGPS
logP	-1.8	ALOGPS
logP	-4.2	ChemAxon
logS	-1.5	ALOGPS
pKa (Strongest Acidic)	-2	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-3	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	203.49 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	70.18 m³·mol⁻¹	ChemAxon
Polarizability	29.69 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0155882

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

Showing chemical card for 6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid (CFc000136290)

MOL for CFc000136290 (6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid)

3D MOL for CFc000136290 (6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid)

3D SDF for CFc000136290 (6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid)

3D-SDF for CFc000136290 (6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid)

PDB for CFc000136290 (6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid)

3D PDB for CFc000136290 (6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid)

SMILES for CFc000136290 (6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid)

INCHI for CFc000136290 (6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid)

Structure for CFc000136290 (6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid)

3D Structure for CFc000136290 (6-hydroxy-3-[4-hydroxy-5-(hydroxymethyl)-3-(sulfooxy)oxolan-2-yl]-2-oxo-2,3-dihydropyrimidine-4-carboxylic acid)