ChemFOnt: Showing chemical card for 6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid (CFc000135660)

Record Information

Version

1.0

Creation Date

2022-08-28 10:25:12 UTC

Update Date

2022-09-13 22:08:44 UTC

Chemfont ID

CFc000135660

Molecule Identification

Common Name

6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid

Definition

6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid belongs to the class of organic compounds known as pyrimidine nucleosides. Pyrimidine nucleosides are compounds comprising a pyrimidine base attached to a ribosyl or deoxyribosyl moiety. Based on a literature review very few articles have been published on 6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylate	Generator

Chemical Formula

C₁₅H₂₁N₃O₁₁

Average Molecular Weight

419.343

Monoisotopic Molecular Weight

419.117608508

IUPAC Name

6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid

Traditional Name

6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxypyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

OCC1OC(C(O)C1O)N1C=CC(=NC2OC(C(O)C(O)C2O)C(O)=O)N=C1O

InChI Identifier

InChI=1S/C15H21N3O11/c19-3-4-6(20)10(24)13(28-4)18-2-1-5(17-15(18)27)16-12-9(23)7(21)8(22)11(29-12)14(25)26/h1-2,4,6-13,19-24H,3H2,(H,25,26)(H,16,17,27)

InChI Key

FSJKTUZUQSXEEJ-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrimidine nucleosides. Pyrimidine nucleosides are compounds comprising a pyrimidine base attached to a ribosyl or deoxyribosyl moiety.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Pyrimidine nucleosides

Sub Class

Not Available

Direct Parent

Pyrimidine nucleosides

Alternative Parents

Substituents

Pyrimidine nucleoside
N-glucuronide
Glucuronic acid or derivatives
Glycosyl compound
N-glycosyl compound
Beta-hydroxy acid
Hydroxypyrimidine
Hydropyrimidine
Hydroxy acid
Monosaccharide
Pyrimidine
Pyran
Oxane
Heteroaromatic compound
Tetrahydrofuran
Secondary alcohol
Carboxylic acid derivative
Carboxylic acid
Oxacycle
Monocarboxylic acid or derivatives
Azacycle
Organoheterocyclic compound
Polyol
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Carbonyl group
Alcohol
Organonitrogen compound
Organooxygen compound
Primary alcohol
Organic oxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Not Available

Not Available

Not Available

Physical Properties

Predicted Properties

Property	Value	Source
Water Solubility	13.7 g/L	ALOGPS
logP	-2.8	ALOGPS
logP	-3.7	ChemAxon
logS	-1.5	ALOGPS
pKa (Strongest Acidic)	3.23	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	14	ChemAxon
Hydrogen Donor Count	8	ChemAxon
Polar Surface Area	225.33 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	87.97 m³·mol⁻¹	ChemAxon
Polarizability	38.43 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0155252

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

Showing chemical card for 6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid (CFc000135660)

MOL for CFc000135660 (6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D MOL for CFc000135660 (6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D SDF for CFc000135660 (6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D-SDF for CFc000135660 (6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid)

PDB for CFc000135660 (6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D PDB for CFc000135660 (6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid)

SMILES for CFc000135660 (6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid)

INCHI for CFc000135660 (6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid)

Structure for CFc000135660 (6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid)

3D Structure for CFc000135660 (6-({1-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2-hydroxy-1,4-dihydropyrimidin-4-ylidene}amino)-3,4,5-trihydroxyoxane-2-carboxylic acid)