ChemFOnt: Showing chemical card for (6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid (CFc000125814)

Record Information

Version

1.0

Creation Date

2022-08-28 10:25:12 UTC

Update Date

2022-09-13 21:52:46 UTC

Chemfont ID

CFc000125814

Molecule Identification

Common Name

(6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid

Definition

(6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid belongs to the class of organic compounds known as tetracyclines. These are polyketides having an octahydrotetracene-2-carboxamide skeleton, substituted with many hydroxy and other groups. Based on a literature review very few articles have been published on (6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid.

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
(6S,12AR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidate	Generator

Chemical Formula

C₂₇H₃₅N₃O₉

Average Molecular Weight

545.589

Monoisotopic Molecular Weight

545.237329719

IUPAC Name

(6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid

Traditional Name

(6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-(pyrrolidin-1-ylmethyl)-3,4,4a,5,5a,11a-hexahydro-2H-tetracene-2-carboximidic acid

CAS Registry Number

Not Available

SMILES

[H]C1(O)C([H])(N(C)C)C2([H])C([H])(O)C3([H])C([H])(C(=O)C4=C(C=CC=C4O)[C@@]3(C)O)C(=O)[C@]2(O)C(=O)C1([H])C(O)=NCN1CCCC1

InChI Identifier

InChI=1S/C27H35N3O9/c1-26(38)12-7-6-8-13(31)14(12)20(32)15-17(26)22(34)18-19(29(2)3)21(33)16(24(36)27(18,39)23(15)35)25(37)28-11-30-9-4-5-10-30/h6-8,15-19,21-22,31,33-34,38-39H,4-5,9-11H2,1-3H3,(H,28,37)/t15?,16?,17?,18?,19?,21?,22?,26-,27+/m1/s1

InChI Key

IKCCXNFMSXSAMP-BDANDXTRSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tetracyclines. These are polyketides having an octahydrotetracene-2-carboxamide skeleton, substituted with many hydroxy and other groups.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Tetracyclines

Sub Class

Not Available

Direct Parent

Tetracyclines

Alternative Parents

Substituents

Tetracycline
Tetralin
Aryl ketone
Aryl alkyl ketone
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Aralkylamine
1,3-diketone
1,3-dicarbonyl compound
N-alkylpyrrolidine
Benzenoid
Vinylogous acid
Cyclic alcohol
Pyrrolidine
Tertiary alcohol
Ketone
Secondary alcohol
Tertiary amine
Tertiary aliphatic amine
1,2-aminoalcohol
Propargyl-type 1,3-dipolar organic compound
Carboximidic acid
Organoheterocyclic compound
Organic 1,3-dipolar compound
Carboximidic acid derivative
Azacycle
Polyol
Organic oxygen compound
Organooxygen compound
Organonitrogen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organic nitrogen compound
Carbonyl group
Alcohol
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Exogenous (HMDB: HMDB0145405)

Process

Not Available

Role

Not Available

Physical Properties

Predicted Properties

Property	Value	Source
Water Solubility	3.46 g/L	ALOGPS
logP	0.5	ALOGPS
logP	-2.5	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	2.46	ChemAxon
pKa (Strongest Basic)	6.9	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	191.43 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	137.76 m³·mol⁻¹	ChemAxon
Polarizability	56.52 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0145405

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

Showing chemical card for (6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid (CFc000125814)

MOL for CFc000125814 ((6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid)

3D MOL for CFc000125814 ((6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid)

3D SDF for CFc000125814 ((6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid)

3D-SDF for CFc000125814 ((6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid)

PDB for CFc000125814 ((6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid)

3D PDB for CFc000125814 ((6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid)

SMILES for CFc000125814 ((6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid)

INCHI for CFc000125814 ((6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid)

Structure for CFc000125814 ((6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid)

3D Structure for CFc000125814 ((6S,12aR)-4-(dimethylamino)-3,5,6,10,12a-pentahydroxy-6-methyl-1,11,12-trioxo-N-[(pyrrolidin-1-yl)methyl]-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid)