ChemFOnt: Showing chemical card for (3S)-3-Hydroxydodec-cis-6-enoyl-CoA (CFc000007994)

Record Information

Version

1.0

Creation Date

2022-08-28 10:25:12 UTC

Update Date

2022-09-13 18:54:35 UTC

Chemfont ID

CFc000007994

Molecule Identification

Common Name

(3S)-3-Hydroxydodec-cis-6-enoyl-CoA

Definition

(3S)-3-Hydroxydodec-cis-6-enoyl-CoA is an acyl-CoA with (3S)-3-hydroxydodec-cis-6-enoate moiety. An acyl-CoA (or formyl-CoA) is a coenzyme involved in the metabolism of fatty acids. It is a temporary compound formed when coenzyme A (CoA) attaches to the end of a long-chain fatty acid inside living cells. The compound undergoes beta oxidation, forming one or more molecules of acetyl-CoA. This, in turn, enters the citric acid cycle, eventually forming several molecules of ATP. (3S)-3-hydroxydodec-cis-6-enoyl-CoA is an intermediate in Di-unsaturated fatty acid beta-oxidation pathway. In the reaction, it acts as the precursor of producing (3S)-3-hydroxydodec-cis-6-enoyl-CoA[X].

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
(3S)-3-Hydroxy-6Z-dodecenoyl-CoA	HMDB
(3S)-3-Hydroxy-6Z-dodecenoyl-coenzyme A	HMDB
(3S)-3-Hydroxydodec-6Z-enoyl-CoA	HMDB
(3S)-3-Hydroxydodec-6Z-enoyl-coenzyme A	HMDB
3(S)-Hydroxy-cis-6-dodecenoyl-CoA	HMDB
3(S)-Hydroxy-cis-6-dodecenoyl-coenzime a	HMDB
3(S)-Hydroxy-cis-6-dodecenoyl-coenzyme A	HMDB

Chemical Formula

C₃₃H₅₂N₇O₁₈P₃S

Average Molecular Weight

959.788

Monoisotopic Molecular Weight

959.230238121

IUPAC Name

3-hydroxy-3-({2-[(2-{[(3S,6Z)-3-hydroxydodec-6-enoyl]sulfanyl}ethyl)carbamoyl]ethyl}carbamoyl)-2,2-dimethylpropyl ({[(2R,3R,4S,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonatooxy)oxolan-2-yl]methyl phosphonato}oxy)phosphonate

Traditional Name

3-hydroxy-3-({2-[(2-{[(3S,6Z)-3-hydroxydodec-6-enoyl]sulfanyl}ethyl)carbamoyl]ethyl}carbamoyl)-2,2-dimethylpropyl {[(2R,3R,4S,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-(phosphonatooxy)oxolan-2-yl]methyl phosphonato}oxyphosphonate

CAS Registry Number

None

SMILES

CCCCC\C=C/CC[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@@H](O)[C@H]1OP([O-])([O-])=O)N1C=NC2=C1N=CN=C2N

InChI Identifier

InChI=1S/C33H56N7O18P3S/c1-4-5-6-7-8-9-10-11-21(41)16-24(43)62-15-14-35-23(42)12-13-36-31(46)28(45)33(2,3)18-55-61(52,53)58-60(50,51)54-17-22-27(57-59(47,48)49)26(44)32(56-22)40-20-39-25-29(34)37-19-38-30(25)40/h8-9,19-22,26-28,32,41,44-45H,4-7,10-18H2,1-3H3,(H,35,42)(H,36,46)(H,50,51)(H,52,53)(H2,34,37,38)(H2,47,48,49)/p-4/b9-8-/t21-,22+,26-,27-,28?,32+/m0/s1

InChI Key

XPCGRNRSXHPWGU-IDCSGFPPSA-J

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 3-hydroxyacyl coas. These are organic compounds containing a 3-hydroxyl acylated coenzyme A derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acyl thioesters

Direct Parent

3-hydroxyacyl CoAs

Alternative Parents

Substituents

Coenzyme a or derivatives
Purine ribonucleoside 3',5'-bisphosphate
Purine ribonucleoside bisphosphate
Purine ribonucleoside diphosphate
Pentose phosphate
Pentose-5-phosphate
Ribonucleoside 3'-phosphate
Beta amino acid or derivatives
Glycosyl compound
N-glycosyl compound
6-aminopurine
Monosaccharide phosphate
Organic pyrophosphate
Imidazopyrimidine
Purine
Aminopyrimidine
N-substituted imidazole
Alkyl phosphate
Organic phosphoric acid derivative
N-acyl-amine
Monosaccharide
Pyrimidine
Fatty amide
Phosphoric acid ester
Imidolactam
Tetrahydrofuran
Imidazole
Heteroaromatic compound
Azole
Thiocarboxylic acid ester
Carbothioic s-ester
Amino acid or derivatives
Carboxamide group
Secondary carboxylic acid amide
Secondary alcohol
Thiocarboxylic acid or derivatives
Sulfenyl compound
Organoheterocyclic compound
Azacycle
Carboxylic acid derivative
Oxacycle
Alcohol
Organic oxygen compound
Organic nitrogen compound
Hydrocarbon derivative
Organopnictogen compound
Carbonyl group
Primary amine
Organic oxide
Amine
Organosulfur compound
Organooxygen compound
Organonitrogen compound
Organic anion
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Extracellular (HMDB: HMDB0012476)
Membrane (HMDB: HMDB0012476)

Source

Exogenous

Exogenous (HMDB: HMDB0012476)

Endogenous

Endogenous (HMDB: HMDB0012476)

Process

Not Available

Role

Not Available

Physical Properties

Predicted Properties

Property	Value	Source
Water Solubility	3.42 g/L	ALOGPS
logP	1.41	ALOGPS
logP	-3.9	ChemAxon
logS	-2.5	ALOGPS
pKa (Strongest Acidic)	0.83	ChemAxon
pKa (Strongest Basic)	4.95	ChemAxon
Physiological Charge	-4	ChemAxon
Hydrogen Acceptor Count	18	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	395.18 Å²	ChemAxon
Rotatable Bond Count	29	ChemAxon
Refractivity	216.39 m³·mol⁻¹	ChemAxon
Polarizability	90.62 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB029086

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53481428

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

Showing chemical card for (3S)-3-Hydroxydodec-cis-6-enoyl-CoA (CFc000007994)

MOL for CFc000007994 ((3S)-3-Hydroxydodec-cis-6-enoyl-CoA)

3D MOL for CFc000007994 ((3S)-3-Hydroxydodec-cis-6-enoyl-CoA)

3D SDF for CFc000007994 ((3S)-3-Hydroxydodec-cis-6-enoyl-CoA)

3D-SDF for CFc000007994 ((3S)-3-Hydroxydodec-cis-6-enoyl-CoA)

PDB for CFc000007994 ((3S)-3-Hydroxydodec-cis-6-enoyl-CoA)

3D PDB for CFc000007994 ((3S)-3-Hydroxydodec-cis-6-enoyl-CoA)

SMILES for CFc000007994 ((3S)-3-Hydroxydodec-cis-6-enoyl-CoA)

INCHI for CFc000007994 ((3S)-3-Hydroxydodec-cis-6-enoyl-CoA)

Structure for CFc000007994 ((3S)-3-Hydroxydodec-cis-6-enoyl-CoA)

3D Structure for CFc000007994 ((3S)-3-Hydroxydodec-cis-6-enoyl-CoA)